If you’re looking for a comforting twist on a classic favorite, this Butternut Squash Mac and Cheese Recipe is an absolute game changer! It’s creamy, cheesy, and boasts a subtle sweetness from roasted butternut squash that makes every bite feel like a warm hug. Whether you’re serving it for a cozy family dinner or a special gathering, this dish will quickly become a beloved staple in your kitchen.
Why You Should Make This Recipe
Rich, Creamy Flavor with a Healthy Twist: The butternut squash adds natural sweetness and nutrients without overpowering the cheesy goodness.
Easy to Prepare: With simple roasting and blending steps, this recipe fits perfectly into busy weeknights.
Perfect Comfort Food Upgrade: It elevates traditional mac and cheese to something a bit more sophisticated yet just as cozy.
Customizable and Versatile: You can adjust the cheeses or add herbs to fit your taste, making it your own unique creation.
Ingredients & Substitutions
The magic behind this Butternut Squash Mac and Cheese Recipe lies in its straightforward ingredients that work together beautifully. Each item plays a role—from the tender roasted squash that creates the silky sauce, to the sharp cheddar and nutty Gruyere cheeses that bring depth and richness, and finally, the crunchy breadcrumb topping that lends delightful texture.
- Butternut Squash: Roasting enhances its natural sweetness and ensures a creamy base when blended.
- Shallots and Garlic: These aromatics add layers of subtle savory notes.
- Shell Pasta: Its curves and cups are perfect for holding onto the cheese sauce.
- Cheddar and Gruyere Cheese: Together, they form a luscious, melty cheese sauce with a hint of nuttiness.
- Pecorino or Parmesan: Adds a sharp, salty finish that balances the sweetness of the squash.
- Panko Breadcrumbs: For that irresistible crispy topping that contrasts wonderfully with the creamy pasta.
How to Make Butternut Squash Mac and Cheese Recipe
Step 1: Roast the Butternut Squash and Aromatics
Start by preheating your oven to 400°F (200°C). Toss the peeled and cubed butternut squash, roughly chopped shallots, and peeled garlic cloves in olive oil, salt, and pepper. Spread them evenly in a baking dish, then roast for 30 to 40 minutes, or until the squash is meltingly tender and fragrant. This roasting step is crucial—it brings out the squash’s natural sweetness and deepens the overall flavor.
Step 2: Cook the Pasta
While the veggies roast, cook your shell pasta according to the package instructions, aiming for al dente. Drain and set aside. Using shells is brilliant because their little cups catch those creamy cheese-squash sauces beautifully, making every bite perfectly coated.
Step 3: Make the Butternut Squash Sauce
Once the squash and aromatics are roasted, transfer them to a blender or food processor. Add balsamic vinegar for a subtle tang, onion powder, nutmeg for warmth, and milk (or heavy cream for extra indulgence). Blend everything until completely smooth and velvety. This sauce is what transforms your mac and cheese into a silky, luscious dish that’s a little bit surprising and totally delicious.
Step 4: Combine Cheese and Sauce
In a large bowl, mix your creamy butternut squash sauce with grated cheddar, Gruyere, and pecorino or Parmesan cheese. Stir it well so the cheeses melt gently into the velvety base, creating a rich, flavorful sauce that’s ready to envelop your pasta.
Step 5: Assemble and Bake
Combine the cooked pasta with the cheese and squash mixture, making sure each shell is luxuriously coated. Transfer everything into a greased baking dish. Then toss panko breadcrumbs with a bit of extra-virgin olive oil and sprinkle them generously on top for a golden, crunchy finish. Bake at 400°F (200°C) for about 20-25 minutes until the topping is perfectly crisp and browned.
How to Serve Butternut Squash Mac and Cheese Recipe
Garnishes
To take this dish over the top, sprinkle freshly chopped parsley or chives on top for a fresh pop of color and a touch of brightness. A dash of cracked black pepper or a dusting of smoked paprika adds a subtle kick to balance the creaminess. If you like, a small handful of toasted pine nuts or walnuts brings a pleasant crunch and earthiness.
Side Dishes
This butternut squash mac and cheese pairs beautifully with crisp, acidic sides like a refreshing green salad dressed in lemon vinaigrette or roasted Brussels sprouts with a touch of balsamic glaze. For an extra heartier meal, serve alongside roasted chicken or a grilled sausage to complement the rich flavors.
Creative Ways to Present
For a fun spin, try baking individual portions in small ramekins topped with the panko for a party-friendly presentation. You can also scoop the mac and cheese into hollowed mini pumpkins for an eye-catching autumnal serving idea. Drizzling a little truffle oil before serving adds a luxurious aroma that will impress any guest.
Make Ahead and Storage
Storing Leftovers
Leftover Butternut Squash Mac and Cheese keeps beautifully in an airtight container in the refrigerator for up to 3 days. Before storing, allow it to cool completely to preserve texture and avoid condensation that makes the topping soggy.
Freezing
This recipe freezes well, too! Portion it into freezer-safe containers or tightly wrapped foil pans, making it easy to thaw and bake when needed. It will maintain its flavor and texture for about 2-3 months in the freezer.
Reheating
Reheat leftovers covered with foil in a 350°F oven until warmed through to preserve creaminess and crisp up the topping a bit. If reheating from frozen, thaw overnight in the fridge before baking. You can also gently reheat individual servings in the microwave, stirring occasionally for smooth creaminess.
FAQs
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Can I use other types of squash in this recipe?
Absolutely! While butternut squash offers a perfect balance of sweetness and creaminess, you can experiment with acorn or delicata squash for slightly different flavors and textures. Just be sure to roast until tender.
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Is this recipe suitable for a vegetarian diet?
Yes! This Butternut Squash Mac and Cheese Recipe is vegetarian-friendly as it contains no meat or meat-based broths. Just make sure to use cheeses made without animal rennet if you follow strict vegetarian guidelines.
- Can I make this recipe dairy-free?
You can! Substitute dairy milk with unsweetened plant-based milk like almond or oat milk, and use vegan cheese alternatives. Keep in mind the texture and flavor might be a bit different but still enjoyable.
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What can I add to make this recipe more kid-friendly?
Kiddos often love classic cheese flavors, so sticking to mild cheddar works well. You might also consider mixing in cooked peas or finely chopped cooked bacon for extra fun. Avoid strong spices to keep it mild and approachable.
Final Thoughts
If you’re craving something that wraps classic comfort food in a nourishing, vibrant new jacket, you truly can’t go wrong with this Butternut Squash Mac and Cheese Recipe. It’s creamy, cozy, and packed with flavor—and once you make it, I bet it will become your go-to for satisfying dinners that feel special every time.
Print
Butternut Squash Mac and Cheese Recipe
- Prep Time: 20 minutes
- Cook Time: 1 hour
- Total Time: 1 hour 20 minutes
- Yield: 6 servings 1x
- Category: Main Course
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
A creamy and comforting Butternut Squash Mac and Cheese recipe that combines roasted butternut squash with a blend of cheddar, Gruyere, and pecorino cheeses. The squash is roasted and pureed with seasonings to create a smooth sauce, mixed with shell pasta, and topped with crispy panko breadcrumbs baked to golden perfection.
Ingredients
Main Ingredients
- 1 large butternut squash (about 4 cups peeled and cubed)
- 2 shallots, roughly chopped
- 2 cloves garlic, peeled
- 0.5 pound shell pasta
- ¼ cup olive oil or melted butter
- 2.5 teaspoons balsamic vinegar
- 1 teaspoon onion powder
- ¼ teaspoon nutmeg
- Salt and black pepper to taste
- 1½ cups milk or heavy cream
- 2½ cups grated cheddar cheese
- 2½ cups grated Gruyere cheese
- ½ cup finely grated pecorino cheese or Parmesan
Topping
- ¾ cup panko breadcrumbs
- 1½ teaspoons extra-virgin olive oil
Instructions
- Preheat the oven: Set your oven to 400°F (200°C) to prepare for roasting the butternut squash and baking the mac and cheese.
- Roast the squash mixture: Toss the cubed butternut squash, chopped shallots, and whole garlic cloves with ¼ cup olive oil, salt, and black pepper in a baking dish. Roast for 30-40 minutes, or until the squash is fork tender and soft.
- Cook the pasta: While the squash roasts, cook the shell pasta according to package instructions until just al dente. Drain and set aside to prevent overcooking during baking.
- Prepare the squash sauce: Once roasted, transfer the butternut squash, shallots, and garlic to a blender or food processor. Add the balsamic vinegar, onion powder, nutmeg, and milk or cream. Blend until smooth and creamy to form the sauce base.
- Combine cheese and sauce: In a large mixing bowl, blend the roasted squash sauce together with cheddar, Gruyere, and pecorino cheeses until evenly combined.
- Mix pasta and cheese sauce: Add the cooked shell pasta to the cheese and squash sauce mixture, stirring thoroughly so all pasta pieces are coated.
- Prepare breadcrumb topping: In a small bowl, combine the panko breadcrumbs with extra-virgin olive oil, mixing until the crumbs are well coated for a crunchy topping.
- Assemble and bake: Transfer the mac and cheese mixture into a greased baking dish, evenly sprinkle the breadcrumb mixture on top, and bake in the preheated oven for 20-25 minutes until the topping is golden brown and crispy.
- Cool and serve: Allow the dish to cool for a few minutes before serving to let it set and enhance flavors. Enjoy your creamy and flavorful Butternut Squash Mac and Cheese!
Notes
- Ensure the butternut squash is fork tender before blending to prevent a gritty texture in the sauce.
- Cooking pasta until just al dente is key to avoid mushiness after baking.
- Feel free to add fresh or dried herbs such as thyme, rosemary, or sage for added flavor complexity.

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